PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g006310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 296aa    MW: 32665.8 Da    PI: 9.3706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g006310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.94.8e-053880753
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                    + E+ RRd++++ f eL   l ++     +K +K++ L+ +++ +k+
  Csa12g006310.1 38 QSEKLRRDKLKEQFLELGNALDPN----RPKSDKVSLLTDTIQMLKD 80
                    57*******************997....79************99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.9853181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-43787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-1137102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-939102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDQSKKPKAC SESESSVSSS SSSTSGHNLR KQFVLVKQSE KLRRDKLKEQ FLELGNALDP  60
NRPKSDKVSL LTDTIQMLKD VMSQVERLKA EYATLSQESH ELIQEKTELR EEKATLKSDI  120
EILNAQYQHR VRSMVPWRPH YAYPIPVVAI TQGQSTFIPY SASVVNPRIE QASVQKRSSS  180
SGASSKQDYK SKSLDQGNDH KYDVGLELEL KVHAPSLAQQ VSDKSSMALP TSSFCVVVVT  240
IYISHRLIKV TSMQDVSGKE KKESLTPTAN SSNSYSSSQA VQDSSPGGVN DILKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5028883e-46EF502888.1 Arabidopsis lyrata subsp. lyrata isolate 08 At4g36060-like protein gene, partial cds.
GenBankEF5028893e-46EF502889.1 Arabidopsis lyrata subsp. lyrata isolate 10 At4g36060-like protein gene, partial cds.
GenBankEF5028903e-46EF502890.1 Arabidopsis lyrata subsp. lyrata isolate 11 At4g36060-like protein gene, partial cds.
GenBankEF5028913e-46EF502891.1 Arabidopsis lyrata subsp. lyrata isolate 34 At4g36060-like protein gene, partial cds.
GenBankEF5028923e-46EF502892.1 Arabidopsis lyrata subsp. lyrata isolate 49 At4g36060-like protein gene, partial cds.
GenBankEF5028933e-46EF502893.1 Arabidopsis lyrata subsp. lyrata isolate 53 At4g36060-like protein gene, partial cds.
GenBankEF5028943e-46EF502894.1 Arabidopsis lyrata subsp. lyrata isolate 57 At4g36060-like protein gene, partial cds.
GenBankEF5028953e-46EF502895.1 Arabidopsis lyrata subsp. lyrata isolate 59 At4g36060-like protein gene, partial cds.
GenBankEF5028963e-46EF502896.1 Arabidopsis lyrata subsp. petraea isolate 06 At4g36060-like protein gene, partial cds.
GenBankEF5028973e-46EF502897.1 Arabidopsis lyrata subsp. petraea isolate 18 At4g36060-like protein gene, partial cds.
GenBankEF5028983e-46EF502898.1 Arabidopsis lyrata subsp. petraea isolate 24 At4g36060-like protein gene, partial cds.
GenBankEF5028993e-46EF502899.1 Arabidopsis lyrata subsp. petraea isolate 45 At4g36060-like protein gene, partial cds.
GenBankEF5029003e-46EF502900.1 Arabidopsis lyrata subsp. petraea isolate 59 At4g36060-like protein gene, partial cds.
GenBankEF5029013e-46EF502901.1 Arabidopsis lyrata subsp. petraea isolate 11 At4g36060-like protein gene, partial cds.
GenBankEF5029023e-46EF502902.1 Arabidopsis lyrata subsp. petraea isolate 13 At4g36060-like protein gene, partial cds.
GenBankEF5029033e-46EF502903.1 Arabidopsis lyrata subsp. petraea isolate 15 At4g36060-like protein gene, partial cds.
GenBankEF5029043e-46EF502904.1 Arabidopsis lyrata subsp. petraea isolate 18 At4g36060-like protein gene, partial cds.
GenBankEF5029053e-46EF502905.1 Arabidopsis lyrata subsp. petraea isolate 35 At4g36060-like protein gene, partial cds.
GenBankEF5029063e-46EF502906.1 Arabidopsis lyrata subsp. petraea isolate 37 At4g36060-like protein gene, partial cds.
GenBankEF5029073e-46EF502907.1 Arabidopsis lyrata subsp. petraea isolate 41 At4g36060-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446832.11e-131PREDICTED: transcription factor bHLH11-like
SwissprotQ8W2F21e-113BH011_ARATH; Transcription factor bHLH11
TrEMBLR0H1A01e-123R0H1A0_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.7__460__AT4G36060.21e-112(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.18e-94bHLH family protein